Darre, Leonardo: search on Z-Library

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1

From quantum to subcellular scales: multi-scale simulation approaches and the SIRAH force field

Machado, Matías R., Zeida, Ari, Darré, Leonardo, Pantano, Sergio

Journal:

Interface Focus

Year:

2019

Language:

english

File:

PDF, 879 KB

english, 2019

2

Coarse-grained models of water

Leonardo Darré, Matías R. Machado, Sergio Pantano

Journal:

Wiley Interdisciplinary Reviews: Computational Molecular Science

Year:

2012

Language:

english

File:

PDF, 345 KB

english, 2012

3

Transferable Mixing of Atomistic and Coarse-Grained Water Models

Gonzalez, Humberto C., Darré, Leonardo, Pantano, Sergio

Journal:

Journal of Physical Chemistry B

Year:

2013

Language:

english

File:

PDF, 4.54 MB

english, 2013

4

A Zoom on Membrane Fusion through Coarse-Grained, Atomistic and Hybrid Molecular Dynamics of SNARE Proteins

Tek, Alex, Darré, Leonardo, Bond, Peter J., Sansom, Mark S.P., Pantano, Sergio, Baaden, Marc

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 35 KB

english, 2013

5

Announcement

Tek, Alex, Darré, Leonardo, Bond, Peter J., Sansom, Mark S.P., Pantano, Sergio, Baaden, Marc

Journal:

Clinical Neurology and Neurosurgery

Year:

1987

File:

PDF, 31 KB

1987

6

Another Coarse Grain Model for Aqueous Solvation: WAT FOUR?

Darré, Leonardo, Machado, Matías R., Dans, Pablo D., Herrera, Fernando E., Pantano, Sergio

Journal:

Journal of Chemical Theory and Computation

Year:

2010

Language:

english

File:

PDF, 2.92 MB

english, 2010

7

Mixing Atomistic and Coarse Grain Solvation Models for MD Simulations: Let WT4 Handle the Bulk

Darré, Leonardo, Tek, Alex, Baaden, Marc, Pantano, Sergio

Journal:

Journal of Chemical Theory and Computation

Year:

2012

Language:

english

File:

PDF, 5.35 MB

english, 2012

8

Permeation and Dynamics of an Open-Activated TRPV1 Channel

Darré, Leonardo, Furini, Simone, Domene, Carmen

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 631 KB

english, 2015

9

SIRAH: A Structurally Unbiased Coarse-Grained Force Field for Proteins with Aqueous Solvation and Long-Range Electrostatics

Darré, Leonardo, Machado, Matías Rodrigo, Brandner, Astrid Febe, González, Humberto Carlos, Ferreira, Sebastián, Pantano, Sergio

Journal:

Journal of Chemical Theory and Computation

Year:

2015

Language:

english

File:

PDF, 3.56 MB

english, 2015

10

In Silico Identification of PAP-1 Binding Sites in the Kv1.2 Potassium Channel

Jorgensen, Christian, Darré, Leonardo, Vanommeslaeghe, Kenno, Omoto, Kiyoyuki, Pryde, David, Domene, Carmen

Journal:

Molecular Pharmaceutics

Year:

2015

Language:

english

File:

PDF, 3.72 MB

english, 2015

11

Surfactin at the Water/Air Interface and in Solution

Iglesias-Fernández, Javier, Darré, Leonardo, Kohlmeyer, Axel, Thomas, Robert K., Shen, Hsin-Hui, Domene, Carmen

Journal:

Year:

2015

Language:

english

File:

PDF, 1.77 MB

english, 2015

12

Binding of capsaicin to the TRPV1 ion channel

Darré, Leonardo, Domene, Carmen

Journal:

Molecular Pharmaceutics

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

13

Lateral fenestrations in K+-channels explored using MD simulations

Jorgensen, Christian, Darré, Leonardo, Oakes, Victoria, Torella, Rubben, Pryde, David, Domene, Carmen

Journal:

Molecular Pharmaceutics

Year:

2016

Language:

english

File:

PDF, 2.37 MB

english, 2016

14

Permeation and Dynamics of an Open-Activated TRPV1 Channel

Domene, Carmen, Darre, Leonardo, Furini, Simone

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

15

Small Details Matter: the 2’Hydroxyl as a conformational switch in RNA

Darre, Leonardo, Ivani, Ivan, Dans, Pablo D., Gómez, Hansel, Hospital, Adam, Orozco, Modesto

Journal:

Journal of the American Chemical Society

Year:

2016

Language:

english

File:

PDF, 9.69 MB

english, 2016

16

Compaction of Duplex Nucleic Acids upon Native Electrospray Mass Spectrometry

Porrini, Massimiliano, Rosu, Frédéric, Rabin, Clémence, Darré, Leonardo, Gómez, Hansel, Orozco, Modesto, Gabelica, Valérie

Journal:

ACS Central Science

Year:

2017

Language:

english

File:

PDF, 1.97 MB

english, 2017

17

Functional Mapping of the N-terminal Arginine Cluster and C-terminal Acidic Residues of Kir6.2 channel Fused to a G Protein-Coupled Receptor

Principalli, Maria A., Lemel, Laura, Rongier, Anaëlle, Godet, Anne-Claire, Langer, Karla, Revilloud, Jean, Darré, Leonardo, Domene, Carmen, Vivaudou, Michel, Moreau, Christophe J.

Journal:

Biochimica et Biophysica Acta (BBA) - Biomembranes

Year:

2017

Language:

english

File:

PDF, 481 KB

english, 2017

18

Dimerization confers increased stability to nucleases in 5′ halves from glycine and glutamic acid tRNAs

Tosar, Juan Pablo, Gámbaro, Fabiana, Darré, Leonardo, Pantano, Sergio, Westhof, Eric, Cayota, Alfonso

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 5.59 MB

english, 2018

19

Modeling, Simulations, and Bioinformatics at the Service of RNA Structure

Dans, Pablo D., Gallego, Diego, Balaceanu, Alexandra, Darré, Leonardo, Gómez, Hansel, Orozco, Modesto

Journal:

Year:

2018

Language:

english

File:

PDF, 4.99 MB

english, 2018

20

VeriNA3d: An R Package for Nucleic Acids Data Mining

Gallego, Diego, Darré, Leonardo, Dans, Pablo D, Orozco, Modesto, Ponty, Yann

Journal:

Year:

2019

Language:

english

File:

PDF, 526 KB

english, 2019